Info • Rachicladosporium sp. CCFEE 5018

Status

The Rachicladosporium sp. CCFEE 5018 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 44.58
Sequencing read coverage depth
# of contigs 2101
# of scaffolds 2099
# of scaffolds >= 2Kbp 2007
Scaffold N50 392
Scaffold L50 (Mbp) 0.03
# of gaps 2
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.24, 0.24, 0.18


Gene Models ExternalModels
length (bp) of: average median
gene 1533 1242
transcript 1392 1137
exon 611 339
intron 112 59
description:
protein length (aa) 464 379
exons per gene 2.28 2
# of gene models 18892


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Coleine C, Masonjones S, Selbmann L, Zucconi L, Onofri S, Pacelli C, Stajich JE
Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018.
Genome Announc. 2017 Jul 6;5(27):. doi: 10.1128/genomeA.00397-17

Funding

This project was not sequenced at the JGI.