Info • Rachicladosporium antarcticum CCFEE 5527

Status

The Rachicladosporium antarcticum CCFEE 5527 genome sequence and gene models were not determined by the Joint Genome Institute (JGI) but were downloaded from Ensembl Fungi on Apr 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add the functional annotation to this genome.

Genome Assembly
Genome Assembly size (Mbp) 47.41
Sequencing read coverage depth
# of contigs 277
# of scaffolds 267
# of scaffolds >= 2Kbp 225
Scaffold N50 20
Scaffold L50 (Mbp) 0.90
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.81, 1.78, 1.51


Gene Models ExternalModels
length (bp) of: average median
gene 1659 1340
transcript 1509 1239
exon 637 334
intron 112 59
description:
protein length (aa) 503 413
exons per gene 2.37 2
# of gene models 18781


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Coleine C, Masonjones S, Selbmann L, Zucconi L, Onofri S, Pacelli C, Stajich JE
Draft Genome Sequences of the Antarctic Endolithic Fungi Rachicladosporium antarcticum CCFEE 5527 and Rachicladosporium sp. CCFEE 5018.
Genome Announc. 2017 Jul 6;5(27):. doi: 10.1128/genomeA.00397-17

Funding

This project was not sequenced at the JGI.