Info • Ramaria rubella (R. acris) UT-36052-T v1.0

Status

The genome of Ramaria rubella UT-36052-T (R. acris) was sequenced using Illumina technology and assembled using AllPathsLG version R44849.

Summary statistics for the Ramaria acris UT-36052-T v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 105.46
Sequencing read coverage depth 78.9x
# of contigs 5927
# of scaffolds 1553
# of scaffolds >= 2Kbp 1239
Scaffold N50 137
Scaffold L50 (Mbp) 0.23
# of gaps 4374
% of scaffold length in gaps 7.6%
Three largest Scaffolds (Mbp) 1.77, 1.02, 0.94


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other Assembled_RNAseq_reads 55849 54417 97.4%


Gene Models FilteredModels5
length (bp) of: average median
gene 1460 1139
transcript 1163 909
exon 211 137
intron 68 57
description:
protein length (aa) 337 251
exons per gene 5.53 4
# of gene models 19287


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.