Status
Assembly v1 (August 2014) is a minimal draft assembly. A total of 1262 scaffolds and 25.5 Mbp were assembled from Illumina gDNAs using Velvet and AllPathsLG in succession.
Summary statistics for the Ramicandelaber brevisporus CBS
109374 v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 25.53 |
| Sequencing read coverage depth | 168.2x |
| # of contigs | 2789 |
| # of scaffolds | 1262 |
| # of scaffolds >= 2Kbp | 1011 |
| Scaffold N50 | 190 |
| Scaffold L50 (Mbp) | 0.04 |
| # of gaps | 1527 |
| % of scaffold length in gaps | 13.8% |
| Three largest Scaffolds (Mbp) | 0.20, 0.18, 0.15 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | JGI_RNA_contigs | 17497 | 13190 | 75.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1509 | 1200 |
| transcript | 1412 | 1115 |
| exon | 956 | 668 |
| intron | 205 | 106 |
| description: | ||
| protein length (aa) | 418 | 320 |
| exons per gene | 1.48 | 1 |
| # of gene models | 9281 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
