Status
Assembly v1 (August 2014) is a minimal draft assembly. A total of 1262 scaffolds and 25.5 Mbp were assembled from Illumina gDNAs using Velvet and AllPathsLG in succession.
Summary statistics for the Ramicandelaber brevisporus CBS
109374 v1.0 release are below.
Genome Assembly | |
Genome Assembly size (Mbp) | 25.53 |
Sequencing read coverage depth | 168.2x |
# of contigs | 2789 |
# of scaffolds | 1262 |
# of scaffolds >= 2Kbp | 1011 |
Scaffold N50 | 190 |
Scaffold L50 (Mbp) | 0.04 |
# of gaps | 1527 |
% of scaffold length in gaps | 13.8% |
Three largest Scaffolds (Mbp) | 0.20, 0.18, 0.15 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
Other | JGI_RNA_contigs | 17497 | 13190 | 75.4% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1509 | 1200 |
transcript | 1412 | 1115 |
exon | 956 | 668 |
intron | 205 | 106 |
description: | ||
protein length (aa) | 418 | 320 |
exons per gene | 1.48 | 1 |
# of gene models | 9281 |
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.