Info • Rhexocercosporidium sp. MPI-PUGE-AT-0058 v1.0

Status

[January 2018] The Rhexocercosporidium sp. MPI-PUGE-AT-0058 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rhexocercosporidium sp. MPI-PUGE-AT-0058 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 62.75
Sequencing read coverage depth 77.61x
# of contigs 63
# of scaffolds 63
# of scaffolds >= 2Kbp 63
Scaffold N50 10
Scaffold L50 (Mbp) 2.44
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.14, 3.92, 3.38


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 43469 41266 94.9%
Ests est.fasta 177625345 69550670 39.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1792 1572
transcript 1608 1390
exon 496 313
intron 84 58
description:
protein length (aa) 457 380
exons per gene 3.24 3
# of gene models 16722


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Mesny F, Miyauchi S, Thiergart T, Pickel B, Atanasova L, Karlsson M, Hüttel B, Barry KW, Haridas S, Chen C, Bauer D, Andreopoulos W, Pangilinan J, LaButti K, Riley R, Lipzen A, Clum A, Drula E, Henrissat B, Kohler A, Grigoriev IV, Martin FM, Hacquard S
Genetic determinants of endophytism in the Arabidopsis root mycobiome.
Nat Commun. 2021 Dec 10;12(1):7227. doi: 10.1038/s41467-021-27479-y

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.