Info • Rhizophagus clarus HR1

Status

The genome sequence and gene models of Rhizophagus clarus HR1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 116.42
Sequencing read coverage depth
# of contigs 4984
# of scaffolds 4424
# of scaffolds >= 2Kbp 3790
Scaffold N50 576
Scaffold L50 (Mbp) 0.06
# of gaps 560
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 0.39, 0.35, 0.35


Gene Models ExternalModels
length (bp) of: average median
gene 1466 1162
transcript 1140 879
exon 300 167
intron 118 81
description:
protein length (aa) 380 293
exons per gene 3.80 3
# of gene models 27761


Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.