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Info • Rhizophagus diaphanus v1.0

Status

The genome sequence of Rhizophagus diaphanum was not determined by the JGI. The genome was provided by INRA, assembled with AllpathLG, and annotated by Emmanuelle Morin (INRA) using the JGI Annotation Pipeline. This copy of the genome does not include the mitochondrial chromosome or genes.

Summary statistics for the Rhizophagus diaphanum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 125.88
Sequencing read coverage depth 50x
# of contigs 11501
# of scaffolds 2764
# of scaffolds >= 2Kbp 2027
Scaffold N50 269
Scaffold L50 (Mbp) 0.14
# of gaps 8737
% of scaffold length in gaps 12.5%
Three largest Scaffolds (Mbp) 0.69, 0.59, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 200870252 193099662 96.1%
Other Rhidi1_RNA_contigs 74778 68851 92.1%


Gene Models FilteredModels2
length (bp) of: average median
gene 1487 1227
transcript 1096 877
exon 272 159
intron 131 82
description:
protein length (aa) 330 250
exons per gene 4.04 3
# of gene models 23252


Genome Reference(s)

Funding

This project was not sequenced at the JGI.