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Info • Rhizoscyphus ericae UAMH 7357 v1.0

Status

Assembly v1 (Feb 2013) is a standard draft assembly from Illumina gDNAs using AllPathsLG.

Annotation v1 (October 2014) is a standard draft annotation using the JGI Annotation Pipeline.

Summary statistics for the Rhizoscyphus ericae UAMH 7357 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 57.41
Sequencing read coverage depth 120.9x
# of contigs 1025
# of scaffolds 267
# of scaffolds >= 2Kbp 195
Scaffold N50 26
Scaffold L50 (Mbp) 0.70
# of gaps 758
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 1.93, 1.61, 1.56


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 33904 33592 99.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1650 1422
transcript 1479 1257
exon 490 307
intron 87 57
description:
protein length (aa) 423 342
exons per gene 3.02 3
# of gene models 16784


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.