Info • Rhizophagus irregularis A1 v2.0


The Rhizophagus irregularis A1 genome sequence and gene models have not been determined by the JGI, but were received from the laboratory of Nicolas Corradi at University of Ottawa on March 05, 2024. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds and 5) unsupported short models. This resulted in the removal of 3408 models and the generation of the FilteredModels1 (GeneCatalog) gene track. All of the original published models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by the Corradi lab and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into MycoCosm. The JGI Annotation Pipeline was used to add functional annotation to the genes.

Genome Assembly
Genome Assembly size (Mbp) 147.09
Sequencing read coverage depth
# of contigs 250
# of scaffolds 33
# of scaffolds >= 2Kbp 33
Scaffold N50 14
Scaffold L50 (Mbp) 4.76
# of gaps 217
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.39, 6.20, 6.09

Gene Models FilteredModels1
length (bp) of: average median
gene 1547 1254
transcript 1220 963
exon 286 155
intron 102 80
protein length (aa) 407 321
exons per gene 4.26 3
# of gene models 20492

Genome Reference(s)



This project was not sequenced at the JGI.