Info • Rhizodiscina lignyota CBS 133067 v1.0

Status

[May 2015] The Rhizodiscina lignyota genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2011).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rhizodiscina lignyota CBS 133067 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.43
Sequencing read coverage depth 95.9x
# of contigs 43
# of scaffolds 33
# of scaffolds >= 2Kbp 30
Scaffold N50 6
Scaffold L50 (Mbp) 2.16
# of gaps 10
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.06, 3.32, 3.24


Gene Models FilteredModels1
length (bp) of: average median
gene 1525 1317
transcript 1379 1182
exon 487 285
intron 82 58
description:
protein length (aa) 460 394
exons per gene 2.83 2
# of gene models 12801


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.