Info • Rhizopus microsporus ATCC11559 v1.0

Status

[April 2015] The Rhizopus microsporus ATCC 11559 genome was sequenced using the Illumina platform and assembled together with Velvet (Zerbino and Birney, 2008) and AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rhizopus microsporus ATCC11559 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 24.08
Sequencing read coverage depth 135.2x
# of contigs 653
# of scaffolds 595
# of scaffolds >= 2Kbp 526
Scaffold N50 87
Scaffold L50 (Mbp) 0.08
# of gaps 58
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.35, 0.32, 0.26


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests Trinity_assembled_Illumina_ESTs 15179 14286 94.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1422 1179
transcript 1213 980
exon 306 184
intron 72 56
description:
protein length (aa) 367 285
exons per gene 3.96 3
# of gene models 11355


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.