Status
This genome was sequenced by Daniel Wibberg et al. in Institute for Genome Research and Systems Biology, CeBiTec, Bielefeld University, D-33501 Bielefeld, Germany (Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14).
Summary statistics for the Rhizoctonia solani AG-1 IB v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 47.66 |
| Sequencing read coverage depth | 25x |
| # of contigs | 3979 |
| # of scaffolds | 1600 |
| # of scaffolds >= 2Kbp | 1600 |
| Scaffold N50 | 133 |
| Scaffold L50 (Mbp) | 0.08 |
| # of gaps | 2379 |
| % of scaffold length in gaps | 3.5% |
| Three largest Scaffolds (Mbp) | 1.08, 0.66, 0.64 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1680 | 1368 |
| transcript | 1327 | 1080 |
| exon | 227 | 130 |
| intron | 75 | 56 |
| description: | ||
| protein length (aa) | 442 | 360 |
| exons per gene | 5.83 | 5 |
| # of gene models | 15157 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
J Biotechnol. 2013 Aug 20;167(2):142-55. doi: 10.1016/j.jbiotec.2012.12.010
Wibberg D, Jelonek L, Rupp O, Hennig M, Eikmeyer F, Goesmann A, Hartmann A, Borriss R, Grosch R, Pühler A, Schlüter A
Establishment and interpretation of the genome sequence of the phytopathogenic fungus Rhizoctonia solani AG1-IB isolate 7/3/14.
J Biotechnol. 2013 Aug 20;167(2):142-55. doi: 10.1016/j.jbiotec.2012.12.010
Funding
This project was not sequenced at the JGI.
