Info • Rhizoctonia solani AG-3 Rhs1AP

Status

The genome sequence and gene models of Rhizoctonia solani AG-3 Rhs1AP were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Rhizoctonia solani AG-3 Rhs1AP are below.
Genome Assembly
Genome Assembly size (Mbp) 51.71
Sequencing read coverage depth 14.1x
# of contigs 4366
# of scaffolds 326
# of scaffolds >= 2Kbp 326
Scaffold N50 2
Scaffold L50 (Mbp) 7.44
# of gaps 4040
% of scaffold length in gaps 9.5%
Three largest Scaffolds (Mbp) 19.05, 7.44, 6.84


Gene Models ExternalModels
length (bp) of: average median
gene 1809 1507
transcript 1445 1194
exon 223 135
intron 68 55
description:
protein length (aa) 463 382
exons per gene 6.47 5
# of gene models 12726


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Cubeta MA, Thomas E, Dean RA, Jabaji S, Neate SM, Tavantzis S, Toda T, Vilgalys R, Bharathan N, Fedorova-Abrams N, Pakala SB, Pakala SM, Zafar N, Joardar V, Losada L, Nierman WC
Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP.
Genome Announc. 2014 Oct 30;2(5):. doi: 10.1128/genomeA.01072-14

Funding

This project was not sequenced at the JGI.