Info • Rhizopus stolonifer NRRL 66455 v1.0

Status

[June 2019] The Rhizopus stolonifer NRRL 66455 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. Note: this genome was extracted from a metagenomic sample which included 2 bacteria, Stenotrophomonas sp. and Pseudomonas sp., both of which are available in the downloads section.

Summary statistics for the Rhizopus stolonifer NRRL 66455 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.44
Sequencing read coverage depth 272.58x
# of contigs 326
# of scaffolds 326
# of scaffolds >= 2Kbp 314
Scaffold N50 14
Scaffold L50 (Mbp) 0.90
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.88, 2.77, 1.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 191575794 190068589 99.2%
Other Trinity_assembled_Illumina_transcriptome 89616 52756 58.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1467 1233
transcript 1238 1020
exon 302 183
intron 76 59
description:
protein length (aa) 372 298
exons per gene 4.10 3
# of gene models 14342


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.