Info • Rhodotorula graminis strain WP1 v1.0
Please note that this organism is for archival use only. Please see the current Rhodotorula graminis strain WP1 v1.1 site for the latest data and information.


v1.0 (June 2010):The Rhodotorula graminis strain WP1 genome sequence assembly v1.0 was built with the Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Rhodotorula graminis strain WP1 v1.0 release:

Nuclear Genome Assembly
Nuclear genome size 21
Sequencing read coverage depth 8.55x
Reported # of contigs 323
# of nuclear scaffolds 26
# of nuclear scaffolds > 2 Kbp 25
Nuclear scaffold N/L50 7 / 1.4 Mbp
% gaps 1.1%
Three largest Scaffolds (Mbp) 2.4

Gene Models v1.01
length (bp) of: average median
gene 2004 2440
transcript 1495 2028
exon 246 51
intron 102 120
protein length (aa) 498 676
exons per gene 6.1 7
# of gene 7262

1FilteredModels2 gene model set


Sharon Lafferty Doty,University of Washington


This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.