Info • Rhodotorula graminis strain WP1 v1.0
v1.0 (June 2010):The Rhodotorula graminis strain WP1 genome sequence assembly v1.0 was built with the Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.
Summary statistics for the Rhodotorula graminis strain WP1 v1.0 release:
| Nuclear Genome Assembly | |
| Nuclear genome size | 21 |
| Sequencing read coverage depth | 8.55x |
| Reported # of contigs | 323 |
| # of nuclear scaffolds | 26 |
| # of nuclear scaffolds > 2 Kbp | 25 |
| Nuclear scaffold N/L50 | 7 / 1.4 Mbp |
| % gaps | 1.1% |
| Three largest Scaffolds (Mbp) |
2.4 1.7 1.6 |
| Gene Models | v1.01 | |
| length (bp) of: | average | median |
| gene | 2004 | 2440 |
| transcript | 1495 | 2028 |
| exon | 246 | 51 |
| intron | 102 | 120 |
| description: | ||
| protein length (aa) | 498 | 676 |
| exons per gene | 6.1 | 7 |
| # of gene | 7262 |
1FilteredModels2 gene model set
This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.
