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Info • Rhodosporidium diobovatum 08-225 v1.0

Status

The Rhodosporidium diobovatum 08-225 genome was not sequenced at JGI, but was provided by Irene Fakankun on Feb 5, 2018 and then annotated using the JGI Annotation Pipeline.

Summary statistics for the Rhodosporidium diobovatum 08-225 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.14
Sequencing read coverage depth 1.0x
# of contigs 614
# of scaffolds 361
# of scaffolds >= 2Kbp 336
Scaffold N50 55
Scaffold L50 (Mbp) 0.12
# of gaps 253
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.56, 0.49, 0.41


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 642128330 631448451 98.3%
Ests Illumina_ESTs 58842 42890 72.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 2176 1868
transcript 1738 1458
exon 292 172
intron 90 76
description:
protein length (aa) 510 412
exons per gene 5.95 5
# of gene models 7974


Funding

This project was not sequenced at the JGI.