Info • Rhodotorula sp. J31 v1.0

Status

[June 2016] The Rhodotorula sp. J31 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rhodotorula sp J31 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.11
Sequencing read coverage depth 141x
# of contigs 205
# of scaffolds 189
# of scaffolds >= 2Kbp 168
Scaffold N50 22
Scaffold L50 (Mbp) 0.23
# of gaps 16
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 1.07, 1.02, 0.90


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 217618573 210157982 96.6%
Ests Trinity_assembled_Illumina_ESTs 33169 31738 95.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2112 1796
transcript 1705 1418
exon 297 177
intron 88 75
description:
protein length (aa) 494 392
exons per gene 5.74 5
# of gene models 7934


Collaborators

John Gladden, Joint Bioenergy Institute (JBEI)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.