Info • Pseudomicrostroma glucosiphilum gen et sp. nov. MCA 4718 v1.0

Status

[Jan 2015] The Pseudomicrostroma glucosiphilum gen et sp. nov. MCA 4718 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Pseudomicrostroma glucosiphilum gen et sp. nov. MCA 4718 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 17.18
Sequencing read coverage depth 97.8x
# of contigs 56
# of scaffolds 30
# of scaffolds >= 2Kbp 29
Scaffold N50 6
Scaffold L50 (Mbp) 0.97
# of gaps 26
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 2.14, 2.10, 1.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 14653 14490 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 2051 1744
transcript 1883 1568
exon 721 398
intron 107 88
description:
protein length (aa) 548 445
exons per gene 2.61 2
# of gene models 6681


Collaborators

Dr. Catherine Aime, Purdue University, IN

 Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Kijpornyongpan T, Mondo SJ, Barry K, Sandor L, Lee J, Lipzen A, Pangilinan J, LaButti K, Hainaut M, Henrissat B, Grigoriev IV, Spatafora JW, Aime MC
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina.
Mol Biol Evol. 2018 Aug 1;35(8):1840-1854. doi: 10.1093/molbev/msy072

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.