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Info • Rhodotorula glutinis v1.0

Status

[June 2016] The Rhodotorula glutinis ATCC 28052 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Rhodotorula glutinis ATCC 28052 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.09
Sequencing read coverage depth 116.3x
# of contigs 221
# of scaffolds 206
# of scaffolds >= 2Kbp 188
Scaffold N50 28
Scaffold L50 (Mbp) 0.20
# of gaps 15
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.73, 0.69, 0.60


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 252218353 241172957 95.6%
Ests Trinity_assembled_Illumina_ESTs 35333 33336 94.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 2106 1776
transcript 1712 1423
exon 284 171
intron 80 64
description:
protein length (aa) 503 398
exons per gene 6.03 5
# of gene models 8277


Collaborators

John Gladden, Joint Bioenergy Institute (JBEI)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.