Status
[March 2014] The Rhodotorula minuta genome was
sequenced using the Illumina platform and assembled with AllPathsLG
release version R46652 (Gnerre
et al., 2010).
Mitochondrial genome was assembled separately and is available in
the downloads section.
Summary statistics for the Rhodotorula minuta MCA 4210
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.82 |
| Sequencing read coverage depth | 94.7x |
| # of contigs | 57 |
| # of scaffolds | 38 |
| # of scaffolds >= 2Kbp | 30 |
| Scaffold N50 | 3 |
| Scaffold L50 (Mbp) | 3.45 |
| # of gaps | 19 |
| % of scaffold length in gaps | 0.1% |
| Three largest Scaffolds (Mbp) | 4.04, 3.55, 3.45 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | Trinity assembled Illumina ESTs | 19287 | 15882 | 82.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 2076 | 1792 |
| transcript | 1698 | 1426 |
| exon | 302 | 177 |
| intron | 84 | 71 |
| description: | ||
| protein length (aa) | 493 | 395 |
| exons per gene | 5.61 | 5 |
| # of gene models | 7814 |
Collaborators
Joseph
Spatafora, Oregon State University, USA
Mary
Catherine Aime, Purdue University, USA
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Camiolo S, Toome-Heller M, Aime MC, Haridas S, Grigoriev IV, Porceddu A, Mannazzu I
An analysis of codon bias in six red yeast species.
Yeast. 2019 Jan;36(1):53-64. doi: 10.1002/yea.3359
Camiolo S, Toome-Heller M, Aime MC, Haridas S, Grigoriev IV, Porceddu A, Mannazzu I
An analysis of codon bias in six red yeast species.
Yeast. 2019 Jan;36(1):53-64. doi: 10.1002/yea.3359
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
