Info • Rhodotorula sp. JG-1b


June 2014. The Rhodotorula genome was sequenced using the Illumina platform and assembled using AllPathsLG release version R47710 (Gnerre et al. 2010). The genome was annotated with the JGI annotation pipeline and custom analyses.

Summary statistics for the Rhodotorula sp. JG-1b v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 19.39
Sequencing read coverage depth 134
# of contigs 164
# of scaffolds 156
# of scaffolds >= 2Kbp 142
Scaffold N50 18
Scaffold L50 (Mbp) 0.30
# of gaps 8
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.02, 0.99, 0.92

Gene Models FilteredModels1
length (bp) of: average median
gene 2061 1711
transcript 1555 1257
exon 247 146
intron 97 75
protein length (aa) 518 419
exons per gene 6.30 5
# of gene models 6680


Corien Bakermans, Altoona College, Pennsylvania State University

Genome Reference(s)



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.