Status
The genome sequence and gene prediction of Rhodosporidium toruloides NP11 have not been determined by the JGI, but were downloaded from Genbank on Dec 5th, 2014. Please note that this copy of the genome is not maintained by the authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.
Summary statistics for the Rhodosporidium toruloides NP11
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.22 |
| Sequencing read coverage depth | 1x |
| # of contigs | 181 |
| # of scaffolds | 94 |
| # of scaffolds >= 2Kbp | 71 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 0.57 |
| # of gaps | 87 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 1.53, 1.52, 1.42 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1995 | 1678 |
| transcript | 1601 | 1314 |
| exon | 256 | 146 |
| intron | 77 | 64 |
| description: | ||
| protein length (aa) | 534 | 438 |
| exons per gene | 6.26 | 5 |
| # of gene models | 8140 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Zhu Z, Zhang S, Liu H, Shen H, Lin X, Yang F, Zhou YJ, Jin G, Ye M, Zou H, Zhao ZK
A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides.
Nat Commun. 2012;3():1112. doi: 10.1038/ncomms2112
Zhu Z, Zhang S, Liu H, Shen H, Lin X, Yang F, Zhou YJ, Jin G, Ye M, Zou H, Zhao ZK
A multi-omic map of the lipid-producing yeast Rhodosporidium toruloides.
Nat Commun. 2012;3():1112. doi: 10.1038/ncomms2112
Funding
This project was not sequenced at the JGI.
