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Info • Rhodosporidium toruloides IFO0559_1

Status

The genome sequence and gene predictions were obtained from Jeffrey Skerker on Oct 4, 2015.
Please cite:
Shuyan Zhang, Jeffrey M. Skerker, Charles D. Rutter, Matthew J. Maurer, Adam P. Arkin, and Christopher V. Rao., 2015. Engineering Rhodosporidium toruloides for increased lipid production. Biotechnology and Bioengineering

Summary statistics for the Rhodosporidium toruloides IFO0559_1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.15
Sequencing read coverage depth
# of contigs 48
# of scaffolds 48
# of scaffolds >= 2Kbp 47
Scaffold N50 7
Scaffold L50 (Mbp) 1.39
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.75, 1.71, 1.67


Gene Models ExternalModels
length (bp) of: average median
gene 2056 1711
transcript 1620 1314
exon 259 149
intron 85 64
description:
protein length (aa) 540 438
exons per gene 6.26 5
# of gene models 8165


Collaborators

 

 

Jeffrey Skerker, UC Berkeley

Adam P. Arkin, UC Berkeley



Genome Reference(s)

Funding

This project was not sequenced at the JGI.