Status
The genome sequence and gene predictions were obtained from Jeffrey Skerker on Oct 4, 2015. Please note that this copy of the genome is not maintained by the author and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins
Summary statistics for the Rhodosporidium toruloides
IFO0880 v2.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 20.81 |
| Sequencing read coverage depth | 1x |
| # of contigs | 30 |
| # of scaffolds | 30 |
| # of scaffolds >= 2Kbp | 30 |
| Scaffold N50 | 6 |
| Scaffold L50 (Mbp) | 1.39 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 2.22, 1.97, 1.86 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 2153 | 1778 |
| transcript | 1670 | 1344 |
| exon | 255 | 147 |
| intron | 89 | 64 |
| description: | ||
| protein length (aa) | 557 | 448 |
| exons per gene | 6.55 | 6 |
| # of gene models | 7466 |
Collaborators
Jeffrey Skerker, UC Berkeley
Adam P. Arkin, UC Berkeley
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Zhang S, Skerker JM, Rutter CD, Maurer MJ, Arkin AP, Rao CV
Engineering Rhodosporidium toruloides for increased lipid production.
Biotechnol Bioeng. 2016 May;113(5):1056-66. doi: 10.1002/bit.25864
Zhang S, Skerker JM, Rutter CD, Maurer MJ, Arkin AP, Rao CV
Engineering Rhodosporidium toruloides for increased lipid production.
Biotechnol Bioeng. 2016 May;113(5):1056-66. doi: 10.1002/bit.25864
Funding
This project was not sequenced at the JGI.
