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Info • Rhodosporidium toruloides IFO1236_1

Status

The genome sequence and gene predictions were obtained from Jeffrey Skerker on Oct 4, 2015.
Please cite:
Shuyan Zhang, Jeffrey M. Skerker, Charles D. Rutter, Matthew J. Maurer, Adam P. Arkin, and Christopher V. Rao., 2015. Engineering Rhodosporidium toruloides for increased lipid production. Biotechnology and Bioengineering

Summary statistics for the Rhodosporidium toruloides IFO1236_1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.45
Sequencing read coverage depth
# of contigs 251
# of scaffolds 223
# of scaffolds >= 2Kbp 194
Scaffold N50 21
Scaffold L50 (Mbp) 0.28
# of gaps 28
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.21, 0.81, 0.74


Gene Models ExternalModels
length (bp) of: average median
gene 2195 1815
transcript 1697 1368
exon 258 150
intron 91 64
description:
protein length (aa) 566 456
exons per gene 6.59 6
# of gene models 7479


Collaborators

Jeffrey Skerker, UC Berkeley

Adam P. Arkin, UC Berkeley

Genome Reference(s)

Funding

This project was not sequenced at the JGI.