Info • Rhynchosporium commune UK7

Status

The genome sequence and gene models of Rhynchosporium commune UK7 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Rhynchosporium commune UK7 are below.
Genome Assembly
Genome Assembly size (Mbp) 55.57
Sequencing read coverage depth 260x
# of contigs 432
# of scaffolds 163
# of scaffolds >= 2Kbp 148
Scaffold N50 22
Scaffold L50 (Mbp) 0.80
# of gaps 269
% of scaffold length in gaps 0.7%
Three largest Scaffolds (Mbp) 3.32, 2.56, 2.04


Gene Models ExternalModels
length (bp) of: average median
gene 1540 1288
transcript 1368 1125
exon 435 233
intron 83 59
description:
protein length (aa) 456 375
exons per gene 3.14 3
# of gene models 12211


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Penselin D, Münsterkötter M, Kirsten S, Felder M, Taudien S, Platzer M, Ashelford K, Paskiewicz KH, Harrison RJ, Hughes DJ, Wolf T, Shelest E, Graap J, Hoffmann J, Wenzel C, Wöltje N, King KM, Fitt BD, Güldener U, Avrova A, Knogge W
Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses.
BMC Genomics. 2016 Nov 22;17(1):953. doi: 10.1186/s12864-016-3299-5

Funding

This project was not sequenced at the JGI.