Info • Rhynchosporium secalis 02CH4 6a1

Status

The genome sequence and gene models of Rhynchosporium secalis 02CH4 6a1 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Rhynchosporium secalis 02CH4 6a1 are below.
Genome Assembly
Genome Assembly size (Mbp) 49.34
Sequencing read coverage depth 150x
# of contigs 3995
# of scaffolds 2129
# of scaffolds >= 2Kbp 2129
Scaffold N50 117
Scaffold L50 (Mbp) 0.11
# of gaps 1866
% of scaffold length in gaps 2.2%
Three largest Scaffolds (Mbp) 0.73, 0.51, 0.51


Gene Models ExternalModels
length (bp) of: average median
gene 1439 1187
transcript 1272 1023
exon 420 222
intron 84 59
description:
protein length (aa) 424 341
exons per gene 3.03 3
# of gene models 13145


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Penselin D, Münsterkötter M, Kirsten S, Felder M, Taudien S, Platzer M, Ashelford K, Paskiewicz KH, Harrison RJ, Hughes DJ, Wolf T, Shelest E, Graap J, Hoffmann J, Wenzel C, Wöltje N, King KM, Fitt BD, Güldener U, Avrova A, Knogge W
Comparative genomics to explore phylogenetic relationship, cryptic sexual potential and host specificity of Rhynchosporium species on grasses.
BMC Genomics. 2016 Nov 22;17(1):953. doi: 10.1186/s12864-016-3299-5

Funding

This project was not sequenced at the JGI.