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Info • Rickenella fibula HBK330-10 v1.0

Status

(Apr 2016) The Rickenella fibula IJFM A160 v1.0 genome was sequenced using PacBio, assembled together with Falcon, improved with finisherSC, polished with Quiver, and annotated using the JGI annotation pipeline.

The annotation pipeline identified 3,898 gene models as possible diploid alleles, and excluded them from the filtered model/gene catalog set. These models are shown in the track "secondary_alleles", and are available from the download page.

Summary statistics for the Rickenella fibula v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 59.35
Sequencing read coverage depth 91.45X
# of contigs 529
# of scaffolds 529
# of scaffolds >= 2Kbp 527
Scaffold N50 35
Scaffold L50 (Mbp) 0.40
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.31, 1.77, 1.76


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 86187 77953 90.4%
Ests est.fasta 151463576 144660220 95.5%


Gene Models FilteredModels5
length (bp) of: average median
gene 1665 1412
transcript 1336 1119
exon 231 140
intron 71 58
description:
protein length (aa) 391 314
exons per gene 5.77 4
# of gene models 18897


Collaborators

Hailee Korotkin, University of Tennessee

Joseph W. Spatafora, Oregon State University

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.