Info • Peniophora sp. v1.0

Status

[April 2013] The Peniophora sp. genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R42328 (Gnerre et al., 2010).

Summary statistics for the Peniophora sp. v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.03
Sequencing read coverage depth 141.3x
# of contigs 1236
# of scaffolds 1092
# of scaffolds >= 2Kbp 872
Scaffold N50 105
Scaffold L50 (Mbp) 0.13
# of gaps 144
% of scaffold length in gaps 1.4%
Three largest Scaffolds (Mbp) 0.85, 0.71, 0.44


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 36947 35584 96.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1695 1479
transcript 1434 1236
exon 288 169
intron 68 56
description:
protein length (aa) 416 347
exons per gene 4.98 4
# of gene models 18952


Collaborators

Joseph Spatafora, Oregon State University, USA.

David Hibbett, Clark University, USA.

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.