Status
(December 2015) The Rickenella mellea SZMC22713 genome was sequenced using the Illumina platform and assembled with AllPathsLG version R49403. Both mitochondria and ribosomal content are assembled separately.
Summary statistics for the Rickenella mellea v1.0 release
are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 45.07 |
| Sequencing read coverage depth | 90.4x |
| # of contigs | 1684 |
| # of scaffolds | 848 |
| # of scaffolds >= 2Kbp | 608 |
| Scaffold N50 | 27 |
| Scaffold L50 (Mbp) | 0.36 |
| # of gaps | 836 |
| % of scaffold length in gaps | 2.7% |
| Three largest Scaffolds (Mbp) | 2.92, 1.58, 1.49 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 45054 | 43414 | 96.4% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1673 | 1410 |
| transcript | 1363 | 1138 |
| exon | 240 | 147 |
| intron | 68 | 57 |
| description: | ||
| protein length (aa) | 394 | 318 |
| exons per gene | 5.69 | 4 |
| # of gene models | 17139 |
Collaborators
László Nagy at Clark University
Joseph W. Spatafora at Oregon State University
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Krizsán K, Almási É, Merényi Z, Sahu N, Virágh M, Kószó T, Mondo S, Kiss B, Bálint B, Kües U, Barry K, Cseklye J, Hegedüs B, Henrissat B, Johnson J, Lipzen A, Ohm RA, Nagy I, Pangilinan J, Yan J, Xiong Y, Grigoriev IV, Hibbett DS, Nagy LG
Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.
Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7409-7418. doi: 10.1073/pnas.1817822116
Krizsán K, Almási É, Merényi Z, Sahu N, Virágh M, Kószó T, Mondo S, Kiss B, Bálint B, Kües U, Barry K, Cseklye J, Hegedüs B, Henrissat B, Johnson J, Lipzen A, Ohm RA, Nagy I, Pangilinan J, Yan J, Xiong Y, Grigoriev IV, Hibbett DS, Nagy LG
Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi.
Proc Natl Acad Sci U S A. 2019 Apr 9;116(15):7409-7418. doi: 10.1073/pnas.1817822116
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
