Info • Rosellinia necatrix W97

Status

The genome sequence and gene models of Rosellinia necatrix W97 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Summary statistics for the Rosellinia necatrix W97 are below.
Genome Assembly
Genome Assembly size (Mbp) 44.26
Sequencing read coverage depth 160x
# of contigs 1051
# of scaffolds 239
# of scaffolds >= 2Kbp 239
Scaffold N50 25
Scaffold L50 (Mbp) 0.55
# of gaps 812
% of scaffold length in gaps 1.7%
Three largest Scaffolds (Mbp) 1.78, 1.50, 1.42


Gene Models ExternalModels
length (bp) of: average median
gene 1580 1335
transcript 1384 1140
exon 504 268
intron 115 72
description:
protein length (aa) 461 380
exons per gene 2.75 2
# of gene models 12444


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Shimizu T, Kanematsu S, Yaegashi H
Draft Genome Sequence and Transcriptional Analysis of Rosellinia necatrix Infected with a Virulent Mycovirus.
Phytopathology. 2018 Oct;108(10):1206-1211. doi: 10.1094/PHYTO-11-17-0365-R

Funding

This project was not sequenced at the JGI.