Status
This genome was sequenced by Timothy Y. James ([email protected]) et al. in Department of Ecology and Evolutionary Biology, University of Michigan, Ann Arbor, MI 48109, USA. (Publication: Shared Signatures of Parasitism and Phylogenomics Unite Cryptomycota and Microsporidia (2013)). Please check their data use policies.
Summary statistics for the Rozella allomycis CSF55 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 11.86 |
| Sequencing read coverage depth | 264x |
| # of contigs | 1128 |
| # of scaffolds | 1059 |
| # of scaffolds >= 2Kbp | 496 |
| Scaffold N50 | 52 |
| Scaffold L50 (Mbp) | 0.06 |
| # of gaps | 69 |
| % of scaffold length in gaps | 1.0% |
| Three largest Scaffolds (Mbp) | 0.72, 0.30, 0.27 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1328 | 996 |
| transcript | 1172 | 879 |
| exon | 276 | 164 |
| intron | 48 | 31 |
| description: | ||
| protein length (aa) | 391 | 293 |
| exons per gene | 4.25 | 3 |
| # of gene models | 6350 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
James TY, Pelin A, Bonen L, Ahrendt S, Sain D, Corradi N, Stajich JE
Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia.
Curr Biol. 2013 Aug 19;23(16):1548-53. doi: 10.1016/j.cub.2013.06.057
James TY, Pelin A, Bonen L, Ahrendt S, Sain D, Corradi N, Stajich JE
Shared signatures of parasitism and phylogenomics unite Cryptomycota and microsporidia.
Curr Biol. 2013 Aug 19;23(16):1548-53. doi: 10.1016/j.cub.2013.06.057
Funding
This project was not sequenced at the JGI.
