Info • Russula brevipes BPL707 v1.0

Status

[November 2016] The Russula brevipes BPL707 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section. The transcriptome was sequenced with Illumina and assembled with Trinity.

Russula brevipes BPL707 was identified to be a dikaryon. Therefore we have created 'primary' and 'secondary' allele gene model tracks in the genome browser, as well as provided downloadable files and BLAST databases for these allelic variants.

Summary statistics for the Russula brevipes BPL707 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.53
Sequencing read coverage depth 68.25x
# of contigs 1320
# of scaffolds 1320
# of scaffolds >= 2Kbp 1206
Scaffold N50 78
Scaffold L50 (Mbp) 0.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.27, 0.87, 0.83


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 172054 81128 47.2%
Ests est.fasta 121258805 68337123 56.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1588 1311
transcript 1290 1055
exon 244 156
intron 71 59
description:
protein length (aa) 367 280
exons per gene 5.29 4
# of gene models 14000


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.