Info • Russula compacta BPL669 v1.0

Status

[January 2017] The Russula compacta BPL669 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Russula compacta BPL669 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 45.68
Sequencing read coverage depth 100.98x
# of contigs 984
# of scaffolds 984
# of scaffolds >= 2Kbp 928
Scaffold N50 91
Scaffold L50 (Mbp) 0.14
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.01, 0.92, 0.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 93075 72334 77.7%
Ests est.fasta 126679362 114087458 90.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1713 1440
transcript 1392 1147
exon 243 153
intron 70 58
description:
protein length (aa) 401 317
exons per gene 5.74 4
# of gene models 10834


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.