Info • Russula dissimulans BPL704 v1.0

Status

[September 2016] The Russula dissimulans BPL704 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Russula dissimulans BPL704 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.69
Sequencing read coverage depth 42.95x
# of contigs 489
# of scaffolds 489
# of scaffolds >= 2Kbp 468
Scaffold N50 38
Scaffold L50 (Mbp) 0.29
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.43, 1.42, 1.36


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 107340 84771 79.0%
Ests est.fasta 132272763 130481053 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1655 1376
transcript 1348 1098
exon 243 153
intron 70 58
description:
protein length (aa) 387 300
exons per gene 5.54 4
# of gene models 11865


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.