Info • Russula ochroleuca Přilba v1.0

Status

[March 2018] The Russula ochroleuca Prilba genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

 

Summary statistics for the Russula ochroleuca v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 44.74
Sequencing read coverage depth 191.72x
# of contigs 244
# of scaffolds 244
# of scaffolds >= 2Kbp 230
Scaffold N50 11
Scaffold L50 (Mbp) 1.15
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.22, 2.79, 2.76


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 102986 84188 81.7%
Ests est.fasta 146539891 144322578 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1797 1558
transcript 1480 1251
exon 255 161
intron 68 58
description:
protein length (aa) 423 339
exons per gene 5.80 5
# of gene models 12048


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.