Info • Russula rugulosa BPL654 v1.0

Status

[November 2016] The Russula rugulosa BPL654 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Russula rugulosa BPL654 was identified to be a dikaryon. Therefore we have created 'primary' and 'secondary' allele gene model tracks in the genome browser, as well as provided downloadable files and BLAST databases for these allelic variants.

Summary statistics for the Russula rugulosa BPL654 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 43.45
Sequencing read coverage depth 106.3x
# of contigs 1389
# of scaffolds 1389
# of scaffolds >= 2Kbp 1245
Scaffold N50 103
Scaffold L50 (Mbp) 0.11
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.11, 0.98, 0.57


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 221573 81063 36.6%
Ests est.fasta 148181822 117007927 79.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1566 1286
transcript 1257 1023
exon 229 150
intron 71 59
description:
protein length (aa) 357 273
exons per gene 5.49 4
# of gene models 13281


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.