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Info • Russula seminuda PSC4341-TAS1 v1.0

Status

[November 2018] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was sequenced separately and is available on the Download page.

The RNA samples were heavily contaminated by other fungal species, accounting for the low RNA mapping rates.

Summary statistics for the Russula seminuda PSC4341-TAS1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.10
Sequencing read coverage depth 518.64x
# of contigs 889
# of scaffolds 889
# of scaffolds >= 2Kbp 849
Scaffold N50 44
Scaffold L50 (Mbp) 0.21
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.51, 1.40, 1.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 223869 100529 44.9%
Ests est.fasta 117608074 104394213 88.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 1792 1546
transcript 1464 1248
exon 247 156
intron 69 58
description:
protein length (aa) 422 342
exons per gene 5.92 5
# of gene models 10669


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.