Info • Saccharomyces arboricola H-6

Status

The genome sequence and gene models of Saccharomyces arboricolus H-6 were not determined by the Joint Genome Institute (JGI) but were downloaded from Yeast Population Reference Panel (YPRP), and it is available on NCBI as well (Sep 24, 2019). In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Summary statistics for the Saccharomyces arboricola H-6 are below.
Genome Assembly
Genome Assembly size (Mbp) 11.49
Sequencing read coverage depth 50x
# of contigs 197
# of scaffolds 16
# of scaffolds >= 2Kbp 16
Scaffold N50 6
Scaffold L50 (Mbp) 0.88
# of gaps 181
% of scaffold length in gaps 1.9%
Three largest Scaffolds (Mbp) 1.25, 1.14, 1.05


Gene Models ExternalModels
length (bp) of: average median
gene 1513 1263
transcript 1504 1260
exon 1447 1212
intron 250 117
description:
protein length (aa) 501 420
exons per gene 1.04 1
# of gene models 5309


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Liti G, Nguyen Ba AN, Blythe M, Müller CA, Bergström A, Cubillos FA, Dafhnis-Calas F, Khoshraftar S, Malla S, Mehta N, Siow CC, Warringer J, Moses AM, Louis EJ, Nieduszynski CA
High quality de novo sequencing and assembly of the Saccharomyces arboricolus genome.
BMC Genomics. 2013 Jan 31;14():69. doi: 10.1186/1471-2164-14-69

Funding

This project was not sequenced at the JGI.