Status
The Saccharomyces cerevisiae M3838 genome was sequenced using the Illumina platform and assembled with AllPathsLG.
Summary statistics for the Saccharomyces cerevisiae M3838
v1.0 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 11.57 |
| Sequencing read coverage depth | 95.6x |
| # of contigs | 84 |
| # of scaffolds | 34 |
| # of scaffolds >= 2Kbp | 30 |
| Scaffold N50 | 7 |
| Scaffold L50 (Mbp) | 0.68 |
| # of gaps | 50 |
| % of scaffold length in gaps | 0.4% |
| Three largest Scaffolds (Mbp) | 1.47, 1.03, 0.88 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | Illumina RNASeq assemblies | 6134 | 5276 | 86.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1411 | 1157 |
| transcript | 1398 | 1149 |
| exon | 1285 | 1044 |
| intron | 155 | 85 |
| description: | ||
| protein length (aa) | 458 | 377 |
| exons per gene | 1.09 | 1 |
| # of gene models | 5991 |
Collaborators
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Brown SD, Klingeman DM, Johnson CM, Clum A, Aerts A, Salamov A, Sharma A, Zane M, Barry K, Grigoriev IV, Davison BH, Lynd LR, Gilna P, Hau H, Hogsett DA, Froehlich AC
Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives.
Genome Announc. 2013 Jun 27;1(3):. doi: 10.1128/genomeA.00323-13
Brown SD, Klingeman DM, Johnson CM, Clum A, Aerts A, Salamov A, Sharma A, Zane M, Barry K, Grigoriev IV, Davison BH, Lynd LR, Gilna P, Hau H, Hogsett DA, Froehlich AC
Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives.
Genome Announc. 2013 Jun 27;1(3):. doi: 10.1128/genomeA.00323-13
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
