Info • Saksenaea vasiformis B4078

Status

The genome sequence and gene models of Saksenaea vasiformis B4078 were not determined by the JGI, rather they were acquired from Jason Stajich in June, 2016. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by the Stajich lab and is therefore not automatically updated.

Summary statistics for the Saksenaea vasiformis B4078 release are below.
Genome Assembly
Genome Assembly size (Mbp) 42.50
Sequencing read coverage depth NA
# of contigs 2417
# of scaffolds 2417
# of scaffolds >= 2Kbp 1305
Scaffold N50 143
Scaffold L50 (Mbp) 0.08
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.56, 0.44, 0.39


Gene Models ExternalModels
length (bp) of: average median
gene 1686 1346
transcript 1375 1101
exon 266 159
intron 77 56
description:
protein length (aa) 458 367
exons per gene 5.16 4
# of gene models 9387


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chibucos MC, Soliman S, Gebremariam T, Lee H, Daugherty S, Orvis J, Shetty AC, Crabtree J, Hazen TH, Etienne KA, Kumari P, O'Connor TD, Rasko DA, Filler SG, Fraser CM, Lockhart SR, Skory CD, Ibrahim AS, Bruno VM
An integrated genomic and transcriptomic survey of mucormycosis-causing fungi.
Nat Commun. 2016 Jul 22;7():12218. doi: 10.1038/ncomms12218

Funding

This project was not sequenced at the JGI.