Status
[August 2024] The Sarcosoma latahense CBS 733.68 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Rnnotator. The mitochondrial genome was assembled separately and is available in the Download tab.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 216.82 |
| Sequencing read coverage depth | 232.53x |
| # of contigs | 223 |
| # of scaffolds | 223 |
| # of scaffolds >= 2Kbp | 223 |
| Scaffold N50 | 33 |
| Scaffold L50 (Mbp) | 2.19 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 7.91, 5.46, 4.84 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| EstClusters | ESTclusters | 50689 | 34451 | 68.0% |
| Ests | est.fasta | 178500175 | 171374365 | 96.0% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1672 | 1428 |
| transcript | 1474 | 1238 |
| exon | 415 | 250 |
| intron | 80 | 60 |
| description: | ||
| protein length (aa) | 427 | 339 |
| exons per gene | 3.55 | 3 |
| # of gene models | 12668 |
Collaborators
- Ronald de Vries, Westerdijk Fungal Biodiversity Institute, Netherlands
- Jerome Collemare, Westerdijk Fungal Biodiversity Institute, Netherlands
- Joseph Spatafora, Oregon State University, OR, USA
Links
- 1000 Fungal Genomes Project
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Pezizomycetes Pezizales
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
