Info • Saturnispora dispora NRRL Y-1447

Status

The genome of Saturnispora dispora NRRL Y-1447 was sequenced using Illumina HiSeq 2500 and assembled using DISCOVAR v. 51885, SPAdes v. 3.5.1, and MASURCA v. 3. Please note that this copy of the genome is not maintained by Antonis Rokas or the publication authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Saturnispora dispora NRRL Y-1447 release are below.
Genome Assembly
Genome Assembly size (Mbp) 10.12
Sequencing read coverage depth 45x
# of contigs 646
# of scaffolds 645
# of scaffolds >= 2Kbp 123
Scaffold N50 17
Scaffold L50 (Mbp) 0.22
# of gaps 1
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.43, 0.41, 0.39


Gene Models ExternalModels
length (bp) of: average median
gene 1590 1243
transcript 1525 1210
exon 1261 1033
intron 315 223
description:
protein length (aa) 508 403
exons per gene 1.21 1
# of gene models 4881


Collaborators

Kenneth H Wolfe, University College Dublin, Ireland.

Antonis Rokas, Vanderbilt University, U.S.A.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7

Funding

This project was not sequenced at the JGI.