Info • Schizochytrium aggregatum ATCC 28209

Status

The Schizochytrium aggregatum genome was sequenced using the Solexa and Sanger sequencing platforms and assembled with Arachne.

Summary statistics for the Schizochytrium aggregatum ATCC 28209 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 40.85
Sequencing read coverage depth 71.90x
# of contigs 2236
# of scaffolds 283
# of scaffolds >= 2Kbp 163
Scaffold N50 15
Scaffold L50 (Mbp) 0.64
# of gaps 1953
% of scaffold length in gaps 4.6%
Three largest Scaffolds (Mbp) 3.09, 2.74, 2.66


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests JGI_454_ESTs 1286682 1247520 97.0%
Other JGI_Newbler_EST_contigs 14614 14128 96.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1697 1235
transcript 1500 1155
exon 953 699
intron 345 145
description:
protein length (aa) 452 332
exons per gene 1.57 1
# of gene models 10612


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.