Info • Schizothecium carpinicola IMI 314718 v1.0

Status

[April 2023] The Schizothecium carpinicola IMI 314718 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly
Genome Assembly size (Mbp) 35.25
Sequencing read coverage depth 183.59x
# of contigs 728
# of scaffolds 711
# of scaffolds >= 2Kbp 595
Scaffold N50 43
Scaffold L50 (Mbp) 0.19
# of gaps 17
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.19, 1.02, 0.82


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 47272 45132 95.5%
Ests est.fasta 197308446 195423403 99.0%


Gene Models FilteredModels1
length (bp) of: average median
gene 1853 1571
transcript 1688 1427
exon 608 384
intron 95 62
description:
protein length (aa) 473 376
exons per gene 2.78 2
# of gene models 12169


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.