Status
v.1.0 (March,2009): The assembly release version 1.0 of whole genome shotgun reads was constructed with Arachne, using paired end sequencing reads at an average coverage of ~8.29X. After trimming for vector and quality, 506,140 reads assembled into 36 main genome scaffolds totaling 38.5 MB. Roughly half of the genome is contained in 5 scaffolds all at least 2.5 MB in length.
The current draft release, version 1.0, includes a total of 13,181 gene models predicted and functionally annotated using the JGI annotation pipeline.
Collaborators
- Friedrich-Schiller University, Germany (Erika Kothe)
- Pacific Northwest National Laboratory, WA, USA (Vanessa Bailey, Scott Baker, Jon Magnuson)
- Southeast Missouri State University, MO, USA (Walt Lilly, Allen Gathman)
- Southern Illinois University at Edwardsville, IL, USA (Tom Fowler)
- Union College, NY, USA (Stephen Horton)
- Universiteit Utrecht, The Netherlands (Luis Lugones, Han Wosten)
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, de Vries RP, Record E, Levasseur A, Baker SE, Bartholomew KA, Coutinho PM, Erdmann S, Fowler TJ, Gathman AC, Lombard V, Henrissat B, Knabe N, Kües U, Lilly WW, Lindquist E, Lucas S, Magnuson JK, Piumi F, Raudaskoski M, Salamov A, Schmutz J, Schwarze FW, vanKuyk PA, Horton JS, Grigoriev IV, Wösten HA
Genome sequence of the model mushroom Schizophyllum commune.
Nat Biotechnol. 2010 Sep;28(9):957-63. doi: 10.1038/nbt.1643
Ohm RA, de Jong JF, Lugones LG, Aerts A, Kothe E, Stajich JE, de Vries RP, Record E, Levasseur A, Baker SE, Bartholomew KA, Coutinho PM, Erdmann S, Fowler TJ, Gathman AC, Lombard V, Henrissat B, Knabe N, Kües U, Lilly WW, Lindquist E, Lucas S, Magnuson JK, Piumi F, Raudaskoski M, Salamov A, Schmutz J, Schwarze FW, vanKuyk PA, Horton JS, Grigoriev IV, Wösten HA
Genome sequence of the model mushroom Schizophyllum commune.
Nat Biotechnol. 2010 Sep;28(9):957-63. doi: 10.1038/nbt.1643
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.
