Info • Schizophyllum commune v1.0
Please note that this organism is for archival use only. Please see the current Schizophyllum commune H4-8 v3.0 site for the latest data and information.

Status

v.1.0 (March,2009): The assembly release version 1.0 of whole genome shotgun reads was constructed with Arachne, using paired end sequencing reads at an average coverage of ~8.29X. After trimming for vector and quality, 506,140 reads assembled into 36 main genome scaffolds totaling 38.5 MB. Roughly half of the genome is contained in 5 scaffolds all at least 2.5 MB in length.

The current draft release, version 1.0, includes a total of 13,181 gene models predicted and functionally annotated using the JGI annotation pipeline.

Collaborators

  • Friedrich-Schiller University, Germany (Erika Kothe)
  • Pacific Northwest National Laboratory, WA, USA (Vanessa Bailey, Scott Baker, Jon Magnuson)
  • Southeast Missouri State University, MO, USA (Walt Lilly, Allen Gathman)
  • Southern Illinois University at Edwardsville, IL, USA (Tom Fowler)
  • Union College, NY, USA (Stephen Horton)
  • Universiteit Utrecht, The Netherlands (Luis Lugones, Han Wosten)

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.