Info • Schizophyllum commune 207.1 v1.0


[December 2018] The Schizophyllum commune 207.1 genome was sequenced using Illumina, assembled with SPAdes (v3.12.0), and annotated using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Schizophyllum commune 207.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.64
Sequencing read coverage depth 144.22x
# of contigs 608
# of scaffolds 582
# of scaffolds >= 2Kbp 454
Scaffold N50 35
Scaffold L50 (Mbp) 0.29
# of gaps 26
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.62, 1.39, 1.08

Note: The following EST alignment statistics reflect alignment of reference strain H4-8 RNAseq to the strain 207.1 assembly. Based on poor mapping, H4-8 EST contig assemblies were included only as fgenesh_kg training data when determining the final 207.1 FilteredModels2 annotation.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83121 15186 18.3%
Ests est.fasta 860951048 547502773 63.6%

Gene Models FilteredModels2
length (bp) of: average median
gene 1791 1523
transcript 1438 1222
exon 245 146
intron 75 55
protein length (aa) 459 386
exons per gene 5.87 5
# of gene models 13032



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.