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Info • Schizophyllum commune 223.1 v1.0

Status

[December 2018] The Schizophyllum commune 223.1 genome was sequenced using Illumina, assembled with SPAdes (v3.12.0), and annotated using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Schizophyllum commune 223.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.74
Sequencing read coverage depth 160.99x
# of contigs 749
# of scaffolds 713
# of scaffolds >= 2Kbp 560
Scaffold N50 40
Scaffold L50 (Mbp) 0.27
# of gaps 36
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.31, 1.18, 0.93


Note: The following EST alignment statistics reflect alignment of reference strain H4-8 RNAseq to the strain 223.1 assembly. Based on poor mapping, H4-8 EST contig assemblies were included only as fgenesh_kg training data when determining the final 223.1 FilteredModels2 annotation.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83121 15168 18.2%
Ests est.fasta 860951048 549696218 63.8%


Gene Models FilteredModels2
length (bp) of: average median
gene 1783 1507
transcript 1430 1209
exon 245 146
intron 75 55
description:
protein length (aa) 457 385
exons per gene 5.84 5
# of gene models 13373


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.