Info • Schizophyllum commune 225.1 v1.0


[December 2018] The Schizophyllum commune 225.1 genome was sequenced using Illumina, assembled with SPAdes (v3.12.0), and annotated using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Schizophyllum commune 225.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.25
Sequencing read coverage depth 135.95x
# of contigs 995
# of scaffolds 919
# of scaffolds >= 2Kbp 726
Scaffold N50 58
Scaffold L50 (Mbp) 0.19
# of gaps 76
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.81, 0.69, 0.64

Note: The following EST alignment statistics reflect alignment of reference strain H4-8 RNAseq to the strain 225.1 assembly. Based on poor mapping, H4-8 EST contig assemblies were included only as fgenesh_kg training data when determining the final 225.1 FilteredModels2 annotation.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83121 14157 17.0%
Ests est.fasta 860951048 535346003 62.2%

Gene Models FilteredModels2
length (bp) of: average median
gene 1764 1489
transcript 1414 1194
exon 245 147
intron 76 55
protein length (aa) 452 378
exons per gene 5.77 5
# of gene models 13533



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.