Info • Schizophyllum commune 227.1 v1.0


[December 2018] The Schizophyllum commune 227.1 genome was sequenced using Illumina, assembled with SPAdes (v3.12.0), and annotated using the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Schizophyllum commune 227.1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 38.32
Sequencing read coverage depth 169.43x
# of contigs 1131
# of scaffolds 1000
# of scaffolds >= 2Kbp 776
Scaffold N50 70
Scaffold L50 (Mbp) 0.15
# of gaps 131
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.69, 0.61, 0.56

Note: The following EST alignment statistics reflect alignment of reference strain H4-8 RNAseq to the strain 227.1 assembly. Based on poor mapping, H4-8 EST contig assemblies were included only as fgenesh_kg training data when determining the final 227.1 FilteredModels2 annotation.
ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83121 16538 19.9%
Ests est.fasta 860951048 547673893 63.6%

Gene Models FilteredModels2
length (bp) of: average median
gene 1760 1494
transcript 1408 1196
exon 244 147
intron 76 55
protein length (aa) 450 377
exons per gene 5.76 5
# of gene models 13547



The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.